Scaffold Ga0315287_10298299

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315287_10298299

Scaffold Ga0315287_10298299

Overview

Basic Information
Taxon OID	3300032397 Open in IMG/M
Scaffold ID	Ga0315287_10298299 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1898
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5072	Long. (^o)	-110.3564	Alt. (m)		Depth (m)	87
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076701	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315287_102982994	F076701	GAGG	MVYRPPFIRQGDGSRCQWSNCNCAAHAMAAMRHRLGVDPKNVHGWPPKPAEIRNRVSPTHCGGSDLEENHNAVLHLYGVDLLVRYNIPMATFRSLIISGRGAVVPIWYGVIAPTKYDASPGFTGGHGIYVNERRASDGAYLVYDPLADHRRASIPQGPQWWPASLLQKAAETFPGTRAGCVHASLTRDTEA

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